+1 on adding more dark grains. I would actually add some roasted barley. I would use either an american ale or english ale yeast depending on what type of attenuation you want.
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I like Glacial Trail IPA from Central Waters. And Hopalicious from Ale Asylum is one of my favorite APAs anywhere.
I wouldn't add it. You've already got plenty of specialty grains in there. Too many and you won't really get the effect you're looking for from the Rye as it'll be masked by the extras.