Yes, there are proteins on the surface of the cells that cause them to stick together. Those genes should be inhibited in the presence of sugar, but cooling can cause the yeast to flocc. I've always been able to get high floccing yeasts to re-suspend with a stirplate though, even if in big nasty curdly looking clumps. They should break up in the new wort fine, but you may not be pitching as much yeast as expected if the starter didn't finish.