I've conducted a quick-an-dirty experiment.
I used my stir plate set to 11 and a 3" stir bar, here's a picture of it stirring 1L of water. Figured this was about as much of a vortex as anyone was likely to get.
As I don't have any matches handy, I used a hunting wind indicator. Uses talcum or some other sort of superfine powder to show air currents.
I sampled the air currents in these ways:
Inside the flask, no liquid. Powder rapidly rose out of the flask, noticeable swirling air both in and out of the flask.
Inside the flask, no liquid, with foam stopper. Powder did not appear to escape stopper. (This is an area where the powder isn't a good analog for a gas. But, then neither is smoke.) I used a laser level to watch for particles, didn't see any.
Inside the flask, with liquid, no foam stopper. No noticeable vortex outside the glass, slight vortex inside. The powder that did escape the flask simply wafted out, very much like smoke. There where no signs of circulation.
I also tried no liquid with a foam stopper, firing the powder above the stopper to try and see any air currents. There did not appear to be any, and at this point I didn't see the point in repeating these tests with a loosely crimped piece of foil.
I standby my initial assumption that with any sort of cover diffusion better describes the exchange of gasses between the flask and the outside air.