There is no reason you can't use a rectangular cooler for a tun. The main thing is to try and create a intake screen that covers as much of the bottom of the tun, as possible. You can use just a single intake pipe running the length of the tun, but that will mean there are 'dead zones' in the tun. But most brewers just live with any inefficiency or other issues that might create. Adding more intake pipes to cover more of the bottom, does mean that the dead zones are smaller and efficiency might go up a little bit. I have a couple of intake pipes in my rectangular tun.
It's your choice.